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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
SNP analysis
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
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Category-wise alphabetical list
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Total Resource - 233
A cSNP Map and Database for Human Chromosome 21
A-MADMAN
- Annotation-based MicroArray DataMeta ANalysis tool
AANT
- Amino Acid-Nucleotide Interaction Database
ABA
- A-Bruijn Alignment
ABADV- Allen Brain Atlas-Driven Visualizations
ABMapper
Abysis
Accurate
Aceprimer
acslXtreme
ACToR
- Aggregated Computational Toxicology Resource
ADAN
- Prediction of protein-protein interActions of moDular domAiNs
ADDock
ADGO
ADME
- Absorption, Distribution, Metabolism, Excretion database (by aureus sciences)
ADMEDB by FUJITSU
aeGEPUCI
Affymate
AgBase
- AgricultureBase database
AgdbNet
- antigen sequence database
AgenDA
- Alignment based Gene Detection Algorithm
AGILE
- AliGnIng Long rEads
AIDA array
ALEXA-Seq
- ALternative EXpression Analysis
Algal Function Annotation tool
AliBaba
Align-m
AliGraf
- Graphical Image of Alignment
ALLPATHS
Alta Cyclic
aMAZE
AMEN
- Annotation, Mapping, Expression and Network
AMIADA
- Analysing MIcroArray Data
AMP
- Automated Microarray Pipeline
AncestrySNPminer
ANEXdb
Animal Genome Database
AnimalTFDB
- Animal Transcription Factor DataBase
AnnotationTools
Anti-cancer agent mechanism database
Antibody directory
Antibodypedia
ANTISTAPHYBASE
APD2
- antimicrobial peptide database
APID2NET
APK©
- Adult and Pediatric Kinetics
Arabidopsis MPSS
ARALIPmutantDB
ArchDB
ARMADA
- Automated Robust Microarray Data Analysis
Array Studio
ArrayExpress
ArrayLeaRNA
ArrayOU
ArrayProspector
arraySCOUT
ArrayWiki
ARTS
ASAP II
- Alternative Splicing Annotation Project
ASGS
- Alternatively Splicing Graph server
AspAlt
ASPicDB
- Alterenative Splicing Prediction database
ASSESS
- Analysis of Sample Set Enrichment Scores
Astalavista
- Alternative splicing transcriptional landscape visualization tool
ASTRA
- Alternative Splicing and TRanscription Archives
AtCAST3
ATGCs
- Alignable Tight Genomic Clusters
Athamap gene analysis
Atlas-Indel2
AtPID
atSNP
Attie Lab Diabetes Database
AUREA- Adaptive Unified Relative Expression Analyzer
AutoDock Vina
AutoSNPa
AVA
- Array Visual Analyzer
Avian Genomes
Axeldb or Xenbase
A SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
A4-Adaptive Automated Annotation
AB Large Indel Tool
ABAC database
abcam®
- discover more
AbMiner
ABySS
- Assembly By Short Sequences
ACCUSA
ACEScan
ACT
- Arabidopsis Co-Expression Tool
ADAM
ADAPT II
ADDPLAN
ADHESOMEFANetwork
ADME
- Absorption, Distribution, Metabolism, Excretion databases (by UCSD)
admetSAR
AERD
- Antibody/Epitope Registry database
AgAbDb
- Antigen Antibody Interactions Database
AGD
- Ashbya Genome Database
AGE
- Alignment with Gap Excision
Agene
AHMII
- Agent to Help Microbial Information Integration
Alcovna
- Algorithms for Comparing and Vizualizing Non Assembled data
Alexa-Seq
- Alternative Expression Analysis By RNA Sequencing
Algal Functional Annotation Tool
Alibee
Alignace
Allegro
ALOHOMORA
AMADA
Amborella Genome Database
AMEN-Annotation, Mapping, Expression and Network
AMIGene
- Annotation of MIcrobial Genes
AMPHORA
ANCHOR
angaGEDuCI
Animal Genome Size Database
AnimalTFDB2
ANNOVAR
Antibiotic Kinetics©
Antibody Resource
AntiJen
ANZCTR
- Australian New Zealand Clinical Trials Registry
AphidBase
ApiESTDB
Applied clinical trials online
Arabidopsis Reactome
AraNet
- Probabilistic Functional Gene Network of Arabidopsis thaliana
Argonaute
ARNIE
- AVEXIS Receptor Network with Integrated Expression
Array-Pro Analyzer
- Microarray analysis software for fast, accurate and repeatable results
ArrayExpressHTS
ArrayMiner
- Powerful analysis tool for your microarray gene expression data
ArrayPipe
ArrayProspestor
ArrayTrack
ArrayXPath
ARTS
- Alignment of RNA Tertiary Structures
ASDB
- Alternative Splicing Database
ASIP
- Alternative Splicing in Plants
AspGD
- Aspergillus Genome Database
ASRG
- ArabidopsisSplicing Related Genes
ASSIsT
ASTER spectral library
ASTRAL
ATCC
- American Type Culture Collection
AtGenExpress
Athena
- Arabidopsis thaliana expression network analysis
Atlas-SNP2
AtPID
- Arabidopsis thaliana Protein Interactome Database
ATTED-II
Augustus
Australian cancer trials
AutoPrime
AutoSNPdb
Avadis NGS
AVID
- Annotation Via Integration of Data
AYB
A SNP resource for dissection of phenotypic and genetic variation in Pacific white shrimp (Litopenaeus vannamei)
AAIR
AB Small Indel Tool
ABACAS
- Algorithm Based Automatic Contiguation of Assembled Sequences
AbDesigner
ABS
Accelrys
Ace-it- Array CGH Expression integration tool
AceView
ActiTrack
Adamant
ADDA
- Automatic Domain Decomposition Algorithm
adegenet 1.3-1
ADiR
- Assembler for Di-base Reads
ADME-AP
- Absorption, Distribution, Metabolism, Excretion -Associated Protein
ADVICE
- Automated Detection and Validation of Interaction by Co-Evolution
AffyMAPSDetector
AgBase
AgDB
- Ashbya Genome Database
AGEMAP -Atlas of Gene Expression in Mouse Aging Project
aGeneApart
AHOD - Australian HIV Observational Database
ALE-HAS
ALFRED
Ali Baba
- PubMed as a Graph
AliComp
- Alignments Comparison
AlignACE
ALLERGEN NOMENCLATURE
Alt tox.org
Amadeus
AMDA
- Automated Microarray Data Analysis
AMIA
- Automated Microarray Image Analysis Toolbox for MATLAB
AMOS
- A Modular Open Source whole genome assembler
Amplicon
Anchored DIALIGN
angaGEDUCI
- Anopheles gambiae Gene Expression Database at UC Irvine
AnimalTFDB
Annotation-Modules
Antagomirbase
Antibodies Online
Antibody validation database
ANTIMIC
- A Database of Antimicrobial Peptides Sequences
APADB
APID/APIN
- Agile Protein Interaction DataAnalyzer
APIS
Arabidopsis Co-Expression Tool (ACT)
AraCyc
ArboDraw
Argonaute database
Array Designer
ArrayCluster
ArrayFox
ArrayMining
- Online Microarray Data Mining
Arrayplot
ArrayQuest
- An online DNA microarray analysis system
ArrayVision
ArrayXpath
AS-ALPS
- Alternative Splicing Induced Alteration of Protein Structure
asg
- Alternative Splicing Gallery
ASMD
- Alternative Splicing Mutation Database
ASPic
- Alternative Splicing Prediction
ASRP- Arabidopsis Small RNA Project Database
AssociationViewer
Asterias
atBioNet
ATDB 2.0
- The Animal Toxin DataBase 2.0
Athamap colocalisation
ATHENA- Analysis Tool for Heritable and Environmental Network Associations
ATOME
AtPIN
- Arabidopsis thaliana protein interaction network
ATTED-II
- Arabidopsis thaliana trans-factor and cis-element prediction database
AuPosSOM
AutoDock
AutoPSI
AVA
- Amplicon Variant Analyzer
AVATAR
AVIS
- AJAX viewer of interactive signaling networks
 
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