miRanalyzer | Tool name | miRanalyzer |
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| URL | http://bioinfo2.ugr.es/miRanalyzer/miRanalyzer.php |
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| Important features | Web-based tool that enables interpretational studies of data acquired from deep sequencing experiments. |
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| Citations | Hackenberg M, Sturm M, Langenberger D, FalcF3n-P\E9rez JM, Aransay AM.
miRanalyzer: a microRNA detection and analysis tool for next-generation
sequencing experiments. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W68-76.
Epub 2009 May 11. PubMed PMID: 19433510; PubMed Central PMCID: PMC2703919.
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | EXPERIMENTAL data analysis, http://bioinfo2.ugr.es/miRanalyzer/miRanalyzer.php, Web-based tool that enables interpretational studies of data acquired from deep sequencing experiments., Hackenberg M- Sturm M- Langenberger D- FalcF3n-P\E9rez JM- Aransay AM.
miRanalyzer: a microRNA detection and analysis tool for next-generation
sequencing experiments. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W68-76.
Epub 2009 May 11. PubMed PMID: 19433510; PubMed Central PMCID: PMC2703919.
, 2009, 100, Online/ downloadable , 2. QUERY OR INPUT DATA:, I. SPECIES SUPPORTED INCLUDE: H sapiens- R norvegicus- M musculus- D melanogaster- C elegans-C briggsae A gambiae- A melliferra- B taurus- C familiaris- Ciona intestinalis- Taeniopygia guttata- G gallus- Gasterosteus aculeatus- Oryzya latipes- Pan troglodytes- Macaca mulata- A thaliana- Sus scrofa- Monodelphis domestica- Medicago truncatula- Zea mays- Bombyx mori- D. pseudoobscura- Ornithorhynchus anatinus- Vitis vinifera- Pongo abelii- Tetraodon nigroviridis- Xenopus tropicalis- Danio rerio- Oryza sativa- Pea aphid- bostau4- hg19- mm9-danrer7- tair10 II. QUERY/ INPUT DATA: 1. Upload data containing the reads (Formats: A tab or space separated file OR a multifasta file) 2. Select species and genome assembly version 3. Other parameters such as mismatches- threshold etc (default values provided) III. OUTPUT DATA: details on job status- summary of parameters and results. Information on mapping to known microRNAs- to other libraries like transcriptome and identification of novel microRNAs., Hackenberg M- Rodr\EDguez-Ezpeleta N- Aransay AM. miRanalyzer: an update on the
detection and analysis of microRNAs in high-throughput sequencing experiments.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W132-8. Epub 2011 Apr 22. PubMed
PMID: 21515631; PubMed Central PMCID: PMC3125730 |
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