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A comparative account of microRNA resources, feature-validations and application-based categorizations

Vir-Mir-db

Tool nameVir-Mir-db
URLhttp://alk.ibms.sinica.edu.tw
Important featuresWeb based resource that allows a user to explore predicted viral microRNA hairpins and their corresponding host target gene.
CitationsLi SC, Shiau CK, Lin WC. Vir-Mir db: prediction of viral microRNA candidate hairpins. Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug 15. PubMed PMID: 17702763
Year of publication2008
Rank by usage frequency100
Comments
Function1.1 FIND microRNA: precursor, SPECIES: rat, SPECIES: zebrafish, SPECIES: virus, http://alk.ibms.sinica.edu.tw, Web based resource that allows a user to explore predicted viral microRNA hairpins and their corresponding host target gene., Li SC- Shiau CK- Lin WC. Vir-Mir db: prediction of viral microRNA candidate hairpins. Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug 15. PubMed PMID: 17702763, 2008, 100, Online/ downloadable , I. SPECIES SUPPORTED INCLUDE: human- mouse- rat- zebrafish- rice and Arabidopsis. II. QUERY OR INPUT DATA: 1. Query by GenBank Id.- RefSeq Acc.- or viral scientific name 2. Select 5'arm or 3'arm of chosen virus data for target gene prediction using RNAhybrid Service Page III. OUTPUT DATA: predicted viral microRNA with details on start position- length- sRNA loop score- core MFE and 5' arm- 3' arm details for target prediction in host genome or to match own genomic region. RNAhybrid prediction results are sent via email. IV. ADDITIONAL INFORMATION: The targets are identified by utilizing RNAhybrid program and 3' UTR gene sequences of human- mouse- rat- zebrafish- rice and Arabidopsis.
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