StarMir Tool name | StarMir |
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URL | http://sfold.wadsworth.org |
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Important features | Bioinformatic tool for target identification of microRNAs including those that lack conserved sites, non-conserved human microRNAs, and poorly conserved viral mRNAs. |
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Citations | Long D, Chan CY, Ding Y. Analysis of microRNA-target interactions by a target
structure based hybridization model. Pac Symp Biocomput. 2008:64-74. PubMed PMID:
18232104.
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Year of publication | 2008 |
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Rank by usage frequency | 100 |
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Comments | Downloadable on request |
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Function | FIND TARGET: non conserved, SPECIES: human, http://sfold.wadsworth.org , Bioinformatic tool for target identification of microRNAs including those that lack conserved sites- non-conserved human microRNAs- and poorly conserved viral mRNAs. , Long D- Chan CY- Ding Y. Analysis of microRNA-target interactions by a target
structure based hybridization model. Pac Symp Biocomput. 2008:64-74. PubMed PMID:
18232104.
, 2008, 100, Downloadable on request, Online, I. QUERY OR INPUT DATA: 1. Input or upload microRNA sequence and target sequence (3' UTR required- if possible 5' UTR and CDS) in FASTA format (size limit of mRNA: 10000 nucleotides) 2. Enter email ID for link to results 3. For other parameters default values are provided. II. OUTPUT DATA: details on energetic characterization- target site profile- target mirWIP score |
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