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A comparative account of microRNA resources, feature-validations and application-based categorizations

SomamiR

Tool nameSomamiR
URLhttp://compbio.uthsc.edu/SomamiR/
Important features The database contains a collection of germline and somatic mutations in miRNAs and their targets that have been experimentally shown to impact miRNA function and have been associated with cancer.
CitationsBhattacharya A, Ziebarth JD, Cui Y.SomamiR-a database for somatic mutations impacting microRNA function in cancer. Nucleic Acids Res. 2013 Jan;41(Database issue):D977-82. doi: 10.1093/nar/gks1138. PMID:23180788
Year of publication2013
Rank by usage frequency100
Comments
FunctionFind microRNA, FIND TARGET: pseudo and real, FIND TARGET: non conserved, FIND TARGET: database, FUNCTIONAL ANALYSIS: regulation/ expression, FUNCTIONAL ANALYSIS: pathways, FUNCTIONAL ANALYSIS: SNP/ genetic variations, FUNCTIONAL ANALYSIS: annotation or classification, SPECIES: human, SPECIES: rat , SPECIES: mouse, http://compbio.uthsc.edu/SomamiR/, The database contains a collection of germline and somatic mutations in miRNAs and their targets that have been experimentally shown to impact miRNA function and have been associated with cancer., Bhattacharya A- Ziebarth JD- Cui Y.SomamiR-a database for somatic mutations impacting microRNA function in cancer. Nucleic Acids Res. 2013 Jan;41(Database issue):D977-82. doi: 10.1093/nar/gks1138. PMID:23180788, 2013, 100, Online, Downloadable, Online/ downloadable, Downloadable, SomamiR database highlight the somatic mutations that alter experimentally supported target sites., Find microRNA, Downloadable
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