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A comparative account of microRNA resources, feature-validations and application-based categorizations

SSCprofiler

Tool nameSSCprofiler
URL1. http://www.imbb.forth.gr/SSCprofiler.html 2. http://mirna.imbb.forth.gr/SSCprofiler
Important featuresComputational tool for identification of novel microRNA genes.
CitationsOulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P. Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. Nucleic Acids Res. 2009 Jun;37(10):3276-87. Epub 2009 Mar 25. PubMed PMID: 19324892
Year of publication2009
Rank by usage frequency100
Comments
Function1.1 FIND microRNA: precursor, FIND microRNA: mature form, DISEASE/ TISSUE SPECIFIC, SPECIES: human, 1. http://www.imbb.forth.gr/SSCprofiler.html 2. http://mirna.imbb.forth.gr/SSCprofiler, Computational tool for identification of novel microRNA genes. , Oulas A- Boutla A- Gkirtzou K- Reczko M- Kalantidis K- Poirazi P. Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. Nucleic Acids Res. 2009 Jun;37(10):3276-87. Epub 2009 Mar 25. PubMed PMID: 19324892, 2009, 100, Online, I. QUERY OR INPUT DATA: chromosome number and genomic coordinates (in multiple's of 1000) (hg17) II. OUTPUT DATA: tabular format of results depicting location- selected strand- maximum expression- HMM score- secondary structure of precursor microRNA along with the mature microRNA highlighted in red.
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