RBPmap | Tool name | RBPmap |
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| URL | http://rbpmap.technion.ac.il/ |
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| Important features | RBPmap enables the users to select motifs from a large database of experimentally defined motifs. RBPmap incorporates a position-specific background model, designed uniquely for different genomic regions, such as splice sites, 592 and 392 UTRs, non-coding RNA and intergenic regions. |
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| Citations | Inbal Paz, 1 Idit Kosti, 1 Manuel Ares, Jr, 2 Melissa Cline, 3 and Yael Mandel-Gutfreund.RBPmap: A web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res. 2014 Jul 1; 42(Web Server issue): W36196W367. PMCID: PMC4086114 |
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| Year of publication | 2014 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | FUNCTIONAL ANALYSIS, SPECIES: human, SPECIES: mouse, SPECIES: fly, http://rbpmap.technion.ac.il/, RBPmap enables the users to select motifs from a large database of experimentally defined motifs. RBPmap incorporates a position-specific background model- designed uniquely for different genomic regions- such as splice sites- 592 and 392 UTRs- non-coding RNA and intergenic regions. , Inbal Paz- 1 Idit Kosti- 1 Manuel Ares- Jr- 2 Melissa Cline- 3 and Yael Mandel-Gutfreund.RBPmap: A web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res. 2014 Jul 1; 42(Web Server issue): W36196W367. PMCID: PMC4086114, 2014, 100, Online, Downloadable, RBPmap-enables accurate prediction and mapping of binding sites of a wide range of different RBPs on any RNA sequence of interest- provided by the users. , Find microRNA, Downloadable |
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