PhenoMir | Tool name | PhenoMir |
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| URL | http://mips.helmholtz-muenchen.de/phenomir |
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| Important features | Web based resource on altered microRNA function in disease and physiological processes. |
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| Citations | Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G,
Frishman G, Montrone C, Theis FJ. PhenomiR: a knowledgebase for microRNA
expression in diseases and biological processes. Genome Biol. 2010 Jan
20;11(1):R6. PubMed PMID: 20089154 |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | DISEASE/ TISSUE SPECIFIC, http://mips.helmholtz-muenchen.de/phenomir, Web based resource on altered microRNA function in disease and physiological processes. , Ruepp A- Kowarsch A- Schmidl D- Buggenthin F- Brauner B- Dunger I- Fobo G-
Frishman G- Montrone C- Theis FJ. PhenomiR: a knowledgebase for microRNA
expression in diseases and biological processes. Genome Biol. 2010 Jan
20;11(1):R6. PubMed PMID: 20089154 , 2010, 100, Online/ downloadable , I. QUERY OR INPUT DATA: 1. General search- entries- miRNAs 2. Specific search: Database- database id- disease class- mirna name/ accession id- pubmed id- tissue/ cell line- bioprocess- study design- sample info- organism name- method- evidence- target gene- disease comment- tissue comment- general comment- mirna comment- list as entries- miRNAs 3. List all entries 4. List all diseases 5. List all microRNA II. OUTPUT DATA: details on microRNAs and their state of expression in disease states or biological processes. III. ADDITIONAL INFORMATION: According to the authors- out of 542 PhenomiR entries- 90 provide information about microRNA expression in normal biological processes- such as- cardiac muscle development or eye development- which are unavailable in other sources. The differentiating feature from similar resources like miR2Disease and HMDD is that PhenomiR provides detailed experimental data such as fold-change of microRNA dysregulation etc. |
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