Home   |  About Startbioinfo |   Other web-portals | BdataA  | 

Categories of resources

Suggested Readings
 
 
A comparative account of microRNA resources, feature-validations and application-based categorizations

MaturePred

Tool nameMaturePred
URLhttp://nclab.hit.edu.cn/maturepred/
Important featuresSoftware application that predicts start sites of mature microRNA from newly identified precursor microRNA sequences in plants and animals.
CitationsXuan P, Guo M, Huang Y, Li W, Huang Y. MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs. PLoS One. 2011;6(11):e27422. Epub 2011 Nov 16. PubMed PMID: 22110646; PubMed Central PMCID: PMC3217989.
Year of publication2011
Rank by usage frequency100
CommentsDataset downloadable
FunctionFIND microRNA: mature form, SPECIES: plant, SPECIES: miscellaneous, http://nclab.hit.edu.cn/maturepred/ , Software application that predicts start sites of mature microRNA from newly identified precursor microRNA sequences in plants and animals., Xuan P- Guo M- Huang Y- Li W- Huang Y. MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs. PLoS One. 2011;6(11):e27422. Epub 2011 Nov 16. PubMed PMID: 22110646; PubMed Central PMCID: PMC3217989. , 2011, 100, Dataset downloadable, Online, I. SPECIES SUPPORTED INCLUDE: animal and plant II. QUERY OR INPUT DATA: 1. Choose animal or plant training model. 2. Choose the length of mcroRNAs. "21nt" is recommended for plant species. "22nt" is recommended for animal species. 3. Enter a sequence in FASTA format 4. Multiple sequences prediction: upload a file with multiple sequences (FASTA format & less than 100 sequences) III. OUTPUT DATA: the top 10 scoring and the most likely positions of the predicted microRNAs in both 5' arm and 3' arm is displayed . The sequence displayed in pink is a more likely candidate.
Category

copyright © BdataA; all rights reserved