MaturePred Tool name | MaturePred |
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URL | http://nclab.hit.edu.cn/maturepred/ |
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Important features | Software application that predicts start sites of mature microRNA from newly identified precursor microRNA sequences in plants and animals. |
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Citations | Xuan P, Guo M, Huang Y, Li W, Huang Y. MaturePred: efficient identification of
microRNAs within novel plant pre-miRNAs. PLoS One. 2011;6(11):e27422. Epub 2011
Nov 16. PubMed PMID: 22110646; PubMed Central PMCID: PMC3217989.
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Year of publication | 2011 |
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Rank by usage frequency | 100 |
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Comments | Dataset downloadable |
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Function | FIND microRNA: mature form, SPECIES: plant, SPECIES: miscellaneous, http://nclab.hit.edu.cn/maturepred/ , Software application that predicts start sites of mature microRNA from newly identified precursor microRNA sequences in plants and animals., Xuan P- Guo M- Huang Y- Li W- Huang Y. MaturePred: efficient identification of
microRNAs within novel plant pre-miRNAs. PLoS One. 2011;6(11):e27422. Epub 2011
Nov 16. PubMed PMID: 22110646; PubMed Central PMCID: PMC3217989.
, 2011, 100, Dataset downloadable, Online, I. SPECIES SUPPORTED INCLUDE: animal and plant II. QUERY OR INPUT DATA: 1. Choose animal or plant training model. 2. Choose the length of mcroRNAs. "21nt" is recommended for plant species. "22nt" is recommended for animal species.
3. Enter a sequence in FASTA format 4. Multiple sequences prediction: upload a file with multiple sequences (FASTA format & less than 100 sequences) III. OUTPUT DATA: the top 10 scoring and the most likely positions of the predicted microRNAs in both 5' arm and 3' arm is displayed . The sequence displayed in pink is a more likely candidate. |
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