MicroRNA

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

GeneHub-GEPIS

URL

1. http://research-public.gene.com/ 2.http://research-public.gene.com/Research/genentech/genehub-gepis/index.html 2. http://www.cgl.ucsf.edu/Research/genentech/genehub-gepis/

Important features

GeneHub-GEPIS is a bioinformatic tool for inferring gene expression patterns in a large panel of normal and cancer tissues based on human and mouse EST sequence abundance.

Citations

Zhang Y, Luoh SM, Hon LS, Baertsch R, Wood WI, Zhang Z. GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W152-8. Epub 2007 Jun 1. PubMed PMID: 17545196

Year of publication

2007

Rank by usage frequency

100

Comments

Datasets downloadable

Function

DISEASE/ TISSUE SPECIFIC, SPECIES: mouse, SPECIES: miscellaneous, BROAD SCOPE RESOURCES: miscellanous, 1. http://research-public.gene.com/ 2.http://research-public.gene.com/Research/genentech/genehub-gepis/index.html 3. http://www.cgl.ucsf.edu/Research/genentech/genehub-gepis/ , GeneHub-GEPIS is a bioinformatic tool for inferring gene expression patterns in a large panel of normal and cancer tissues based on human and mouse EST sequence abundance. , Zhang Y- Luoh SM- Hon LS- Baertsch R- Wood WI- Zhang Z. GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W152-8. Epub 2007 Jun 1. PubMed PMID: 17545196, 2007, 100, Datasets downloadable, Online, I. SPECIES SUPPORTED INCLUDE: human- mouse II. QUERY OR INPUT DATA: 1. Choose target species 2. Restrict search to chromosome 3. Search by Accession/ Gene Symbol ( UniProt- GenBank- RefSeq- Entrez Gene- UniGene- Ensembl Transcript)- Affymetrix or Agilent Probe and microRNA. 3. Search by DNA Sequence: enter gene name or upload a single sequence FASTA file III. OUTPUT DATA: details of gene expression pattern including EST hits by libraries- tissue expression profiling- extra charts. Graphical representation of results is provided. IV ADDITIONAL INFORMATION: This tool is built upon the GeneHub database- which brings together gene and protein information from several databases.