GeneCodis Tool name | GeneCodis |
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URL | http://genecodis.dacya.ucm.es |
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Important features | Bioinformatic resource to assist in the interpretational studies of high throughput experiments and functional interpretation of gene lists by integrating biological data from many sources. |
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Citations | Nogales-Cadenas R, Carmona-Saez P, Vazquez M, Vicente C, Yang X, Tirado F,
Carazo JM, Pascual-Montano A. GeneCodis: interpreting gene lists through
enrichment analysis and integration of diverse biological information. Nucleic
Acids Res. 2009 Jul;37(Web Server issue):W317-22. Epub 2009 May 22. PubMed PMID:
19465387; PubMed Central PMCID: PMC2703901.
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Year of publication | 2007 |
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Rank by usage frequency | 100 |
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Comments | The application is freely available. |
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Function | EXPERIMENTAL data analysis, BROAD SCOPE RESOURCES: miscellanous, http://genecodis.dacya.ucm.es , Bioinformatic resource to assist in the interpretational studies of high throughput experiments and functional interpretation of gene lists by integrating biological data from many sources. , Nogales-Cadenas R- Carmona-Saez P- Vazquez M- Vicente C- Yang X- Tirado F-
Carazo JM- Pascual-Montano A. GeneCodis: interpreting gene lists through
enrichment analysis and integration of diverse biological information. Nucleic
Acids Res. 2009 Jul;37(Web Server issue):W317-22. Epub 2009 May 22. PubMed PMID:
19465387; PubMed Central PMCID: PMC2703901.
, 2007, 100, The application is freely available., Online, I. SPECIES SUPPORTED INCLUDE: A. thaliana- B. taurus- C. albicans- C. elegans- E. coli- D. rerio- D. melanogaster- G. gallus- H. sapiens- L.major- M. musculus- R. norvegicus- S. cerevisiae- S. pombe- T. brucei and V. Cholerae II. QUERY OR INPUT DATA: 1. Select the organism 2. Select the annotations:GO Biological Process- GO Cellular Component- GOSlim Process- GOSlim Function- GOSlim Component- KEGG Pathways- InterPro Motifs - MicroRNA- Transcription Factors- 3. Enter list of genes or upload file 4. Advanced options: microarray reference- own annotations III. OUTPUT DATA: depends on the type of analysis chosen. Details of co-occuring annotations in a a given set of genes or singular annotation results. Further- graphical representation of results is provided.
, Predict whether microRNA:mRNA interaction will take place at a specified concentration., 4.2 EXPERIMENTAL aids; predicting mRNA-microRNA interaction |
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