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CLIPZ

Tool nameCLIPZ
URLhttp://www.clipz.unibas.ch/
Important featuresWeb based resource and in silico analysis tool for experimentally derived target sites of RNA binding proteins.
CitationsKhorshid M, Rodak C, Zavolan M. CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res. 2011 Jan;39(Database issue):D245-52. Epub 2010 Nov 17. PubMed PMID: 21087992M.
Year of publication2011
Rank by usage frequency100
CommentsThe user is required to register or login prior to uploading or analyzing data
FunctionEXPERIMENTAL data analysis, http://www.clipz.unibas.ch/, Web based resource and in silico analysis tool for experimentally derived target sites of RNA binding proteins., Khorshid M- Rodak C- Zavolan M. CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res. 2011 Jan;39(Database issue):D245-52. Epub 2010 Nov 17. PubMed PMID: 21087992M. , 2011, 100, The user is required to register or login prior to uploading or analyzing data, Online, I. QUERY OR INPUT DATA : Short reads from crosslinking and immunoprecipitation experiments (CLIP) using RNA-binding proteins- mRNA-Seq- Digital Gene Expression- small RNA cloning- etc. II. OUTPUT DATA: Related to details of functional annotation of short reads- sample clustering- expression profiles- sample comparison- sample principle component analysis. III. ADDITIONAL INFORMATION: 1. The platform is able to support individual as well as synergetic projects handled by several teams or many members including public and self owned datasets. 2. CLIP (crosslinking and immunoprecipitation experiments)- mRNA -Seq- Digital Gene Expression- small RNA cloning are some of the experiments for which data analysis can be performed., Identify microRNA targets based on features of non conservation.
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